New in ATSAS-4.0.0

New Programs
- launcher
- efamix
- mixtures
- peak/qt
Removed Programs
- lipmix
- bilmix
- mixture
overall GUI Program redesign
- all
  - new feature: save current application state as project
  - new feature: common Model-View Framework use for all Qt-based GUI applications
  - new feature: common wizard framework
  - new feature: plot annotations, freely placeable labels and lines
  - new feature: export any plot as figure (SVG, PNG, TIFF, PDF) and text (CSV)
  - new feature: parallel processing wherever possible to speed up calculations
- chromixs
  - re-imagined user interface for selecting multiple and possibly disconnected regions
  - parallel processing of Rg/MW and subtractions
  - wizard for Evolving Factor Analysis with efamix
- peak
  - redesigned UI for multiple peak fitting and removal
  - additional fitting functions (lorentzian, pseudo-voigt)
- primus
  - redesigned UI to improve intuitive use
  - redesigned all wizards for parallel processing/calculations
  - distances wizard allows re-open an existing .out
  - improved and simplified data comparisons
Changes in Programs
- ambimeter
  - fixed out-of-bounds access
  - converted binary to mmCIF
  - fixed label of reported fit measure from ‘Chi-square’ to ‘R-factor’
- bodies
  - made model output format configurable
- bunch
  - fixed out-of-bounds access, initialize variables
  - made model output format configurable
  - removed broken ‘batchfile’ argument
- coral
  - when looking for backbone CA, make sure that they are not CAlcium
  - added crysol options that allow override of errors
  - made model output format configurable
  - removed broken ‘batchfile’ argument
- damaver
  - made model output format configurable
  - fixed an issue with excessively large models
- dammif
  - made model output format configurable
- dammin
  - made model output format configurable
  - include maximum distance in model output
- dammix
  - added crysol options that allow override of errors
  - made model output format configurable
- datcrop
  - fixed out-of-bounds access
- elllip
  - added basic command-line interface
  - made model output format configurable
- em2dam
  - made model output format configurable
- ffmaker
  - added crysol-related options
- flexbin
  - added basic command-line interface
  - made model output format configurable
- gasbor
  - fixed issue reading an optional sequence
  - made model output format configurable
  - include maximum distance in model output
  - provide volume fractions in mmCif output
- globsymm
  - report Chi-square
  - include error estimates in .fit output
  - made model output format configurable
- glycosylation
  - made model output format configurable
  - include meta-data in output
- gnom
  - fixed out-of-bounds access
  - correctly output slit parameters on “infinitely long” slits, i.e. AH>0.0, LH==0.0
- monsa
  - made model output format configurable
- nmator
  - added crysol-related options
- nnlsjoe
  - do not read more lines than requested by poolsize
- primus
  - fixed multiple Qt6 connection errors
  - distances wizard: allow alpha up to 999999.9999
  - wizards: added crysol options that allow override of errors
  - wizards: made model output format configurable
- ranch
  - handle the case where the provided sequence has more residues than the corresponding structure.
  - made model output format configurable
- sasref/sasrefcv/sasrefmx
  - handle empty models
  - added crysol options that allow override of errors
  - made model output format configurable
  - removed ‘template’ argument
  - NOTE: order of subunit numbering has changed!
- sreflex
  - document ‘concoord’ option
  - added crysol options that allow override of errors
  - fixed timing issue on filesystem access
- library
  - scale/adjust: handle the case of two or more inputs with missing errors
  - PDB: warn about possibly misread values due to misalignment
  - PDB: improved output of meta-data
  - PDB: improved reading of dummy-residues when phase information is absent
  - mmCIF: handle optional columns, improved reading of meta-data
  - mmCIF: improved output of meta-data
- all
  - cleaned up version reporting, update copyright notices
  - updated manuals
- macOS:
  - sign & notarize package
- Windows/Linux:
  - updated MKL libraries
  - performance improvements
  - sign package